/*
This macro tests the workaround in ImageJ 1.50e for 
a bug in Java 8 on Mac OSX that causes macros not running 
in batch mode to slow down over time. In ImageJ 1.50e and later,
when a macro is running, the ImageJ menu is not set (displayed at
the top of the screen) when an image window is activated.

Java 1.6/1.50d/batch mode: 1.3
Java 1.6/1.50e/batch mode: 1.3
Java 1.6/1.50d: 81.2
Java 1.6/1.50e: 9.6
Java 1.8/1.50d/batch mode: 1.2
Java 1.8/1.50e/batch mode: 1.2
Java 1.8/1.50d: 56, 116, 207
Java 1.8/1.50e: 24.2

Author: Brandon Hurr
*/

setBatchMode(true);
run("Lena (68K)");
lena = getTitle();
selectWindow(lena);
totalTime = 0;
for (z=0; z<5; z++) {
   startTime = getTime();
   run("Duplicate...", "title=painted");
   run("Duplicate...", "title=colorthresholdsomething");
   selectWindow("colorthresholdsomething");
   // Color Thresholder 2.0.0-rc-39/1.50b
   // Autogenerated macro, single images only!
   min=newArray(3);
   max=newArray(3);
   filter=newArray(3);
   a=getTitle();
   run("RGB Stack");
   run("Convert Stack to Images");
   selectWindow("Red");
   rename("0");
   selectWindow("Green");
   rename("1");
   selectWindow("Blue");
   rename("2");
   min[0]=0;
   max[0]=23;
   filter[0]="pass";
   min[1]=0;
   max[1]=18;
   filter[1]="pass";
   min[2]=126;
   max[2]=255;
   filter[2]="pass";
   for (i=0;i<3;i++){
     selectWindow(""+i);
     setThreshold(min[i], max[i]);
     run("Convert to Mask");
     if (filter[i]=="stop")  run("Invert");
   }
   imageCalculator("AND create", "0","1");
   imageCalculator("AND create", "Result of 0","2");
   for (i=0;i<3;i++){
     selectWindow(""+i);
     close();
   }
   selectWindow("Result of 0");
   close();
   selectWindow("Result of Result of 0");
   rename(a);
   // Colour Thresholding-------------
   run("Convert to Mask");
   invertedLUT = is("Inverting LUT");
   if (invertedLUT == 1) {
      run("Invert LUT");
      run("Invert");
   }
   run("Options...", "iterations=8 count=1 do=Dilate");
   run("Fill Holes");
   run("Create Selection");
   run("Close");
   selectWindow("painted");
   run("Restore Selection");
   setForegroundColor(0, 0, 0);
   run("Fill", "slice");
   run("Select None");
   run("Close");
   endTime = getTime();
   timeDiff = endTime - startTime;
   totalTime += timeDiff;
   if (z==0) print("");
   print(z, timeDiff);
}
print(totalTime/1000+" seconds");