Module ij
Package ij

Class VirtualStack

    • Constructor Detail

      • VirtualStack

        public VirtualStack()
        Default constructor.
      • VirtualStack

        public VirtualStack​(int width,
                            int height)
      • VirtualStack

        public VirtualStack​(int width,
                            int height,
                            java.awt.image.ColorModel cm,
                            java.lang.String path)
        Creates an empty virtual stack.
        Parameters:
        width - image width
        height - image height
        cm - ColorModel or null
        path - file path of directory containing the images
        See Also:
        addSlice(String), OpenAsVirtualStack.js
      • VirtualStack

        public VirtualStack​(int width,
                            int height,
                            int slices)
        Creates a virtual stack with no backing storage.
        See: Help>Examples>JavaScript>Terabyte VirtualStack
      • VirtualStack

        public VirtualStack​(int width,
                            int height,
                            int slices,
                            java.lang.String options)
        Creates a virtual stack with no backing storage.
        See: Help>Examples>JavaScript>Terabyte VirtualStack
    • Method Detail

      • addSlice

        public void addSlice​(java.lang.String fileName)
        Adds an image to the end of a virtual stack created using the VirtualStack(w,h,cm,path) constructor. The argument can be a full file path (e.g., "C:/Users/wayne/dir1/image.tif") if the 'path' argument in the constructor is "". File names that start with '.' are ignored.
      • addSlice

        public void addSlice​(java.lang.String sliceLabel,
                             java.lang.Object pixels)
        Does nothing.
        Overrides:
        addSlice in class ImageStack
      • deleteSlice

        public void deleteSlice​(int n)
        Deletes the specified slice, where 1<=n<=nslices.
        Overrides:
        deleteSlice in class ImageStack
      • deleteLastSlice

        public void deleteLastSlice()
        Deletes the last slice in the stack.
        Overrides:
        deleteLastSlice in class ImageStack
      • getPixels

        public java.lang.Object getPixels​(int n)
        Returns the pixel array for the specified slice, where 1<=n<=nslices.
        Overrides:
        getPixels in class ImageStack
      • setPixels

        public void setPixels​(java.lang.Object pixels,
                              int n)
        Assigns a pixel array to the specified slice, where 1<=n<=nslices.
        Overrides:
        setPixels in class ImageStack
      • getProcessor

        public ImageProcessor getProcessor​(int n)
        Returns an ImageProcessor for the specified slice, where 1<=n<=nslices. Returns null if the stack is empty.
        Overrides:
        getProcessor in class ImageStack
      • saveChanges

        public int saveChanges​(int n)
        Currently not implemented
      • size

        public int size()
        Returns the number of slices in this stack.
        Overrides:
        size in class ImageStack
      • getSliceLabel

        public java.lang.String getSliceLabel​(int n)
        Returns the label of the Nth image.
        Overrides:
        getSliceLabel in class ImageStack
      • getImageArray

        public java.lang.Object[] getImageArray()
        Returns null.
        Overrides:
        getImageArray in class ImageStack
      • setSliceLabel

        public void setSliceLabel​(java.lang.String label,
                                  int n)
        Does nothing.
        Overrides:
        setSliceLabel in class ImageStack
      • isVirtual

        public boolean isVirtual()
        Always return true.
        Overrides:
        isVirtual in class ImageStack
      • trim

        public void trim()
        Does nothing.
        Overrides:
        trim in class ImageStack
      • getDirectory

        public java.lang.String getDirectory()
        Returns the path to the directory containing the images.
      • getFileName

        public java.lang.String getFileName​(int n)
        Returns the file name of the specified slice, where 1<=n<=nslices.
      • setBitDepth

        public void setBitDepth​(int bitDepth)
        Sets the bit depth (8, 16, 24 or 32).
        Overrides:
        setBitDepth in class ImageStack
      • getBitDepth

        public int getBitDepth()
        Returns the bit depth (8, 16, 24 or 32), or 0 if the bit depth is not known.
        Overrides:
        getBitDepth in class ImageStack
      • sortDicom

        public ImageStack sortDicom​(java.lang.String[] strings,
                                    java.lang.String[] info,
                                    int maxDigits)
      • getProperties

        public java.util.Properties getProperties()
        Returns the ImagePlus Properties assoctated with the current slice, or null.
      • setIndexes

        public void setIndexes​(int[] indexes)
        Sets the table that translates slice numbers of hyperstacks not in default CZT order.
      • translate

        public int translate​(int n)
        Translates slice numbers of hyperstacks not in default CZT order.
      • reduce

        public void reduce​(int factor)
        Reduces the number of slices in this stack by a factor.