package ij.plugin;
import ij.*;
import ij.process.*;
import ij.gui.*;
import ij.util.Tools;
import java.awt.*;
import java.util.*;

/** This plugin opens images specified by list of file paths as a virtual stack.
    It implements the File/Import/Stack From List command. */
public class ListVirtualStack extends VirtualStack implements PlugIn {
    private static boolean virtual;
    private String[] list;
    private String[] labels;
    private int nImages;
    private int imageWidth, imageHeight;
    private ImagePlus imp2;

    public void run(String arg) {
        OpenDialog  od = new OpenDialog("Open Image List", arg);
        String name = od.getFileName();
        if (name==null) return;
        String  dir = od.getDirectory();
        //IJ.log("ListVirtualStack: "+dir+"   "+name);
        list = open(dir+name);
        if (list==null) return;
        nImages = list.length;
        labels = new String[nImages];
        //for (int i=0; i<list.length; i++)
        //  IJ.log(i+"  "+list[i]);
        if (list.length==0) {
            IJ.error("Stack From List", "The file path list is empty");
        if (!list[0].startsWith("http://")) {
            File f = new File(list[0]);
            if (!f.exists()) {
                IJ.error("Stack From List", "The first file on the list does not exist:\n \n"+list[0]);
        ImagePlus imp = IJ.openImage(list[0]);
        if (imp==null) return;
        imageWidth = imp.getWidth();
        imageHeight = imp.getHeight();
        ImageStack stack = this;
        if (!showDialog(imp)) return;
        if (!virtual)
            stack = convertToRealStack(imp);
        imp2 = new ImagePlus(name, stack);
    boolean showDialog(ImagePlus imp) {
        double bytesPerPixel = 1;
        switch (imp.getType()) {
            case ImagePlus.GRAY16:
                bytesPerPixel=2; break;
            case ImagePlus.COLOR_RGB:
            case ImagePlus.GRAY32:
                bytesPerPixel=4; break;
        double size = (imageWidth*imageHeight*bytesPerPixel)/(1024.0*1024.0);
        int digits = size*getSize()<10.0?1:0;
        String size1 = IJ.d2s(size*getSize(), digits)+" MB";
        String size2 = IJ.d2s(size,1)+" MB";
        GenericDialog gd = new GenericDialog("Open Stack From List");
        gd.addCheckbox("Use Virtual Stack", virtual);
        gd.addMessage("This "+imageWidth+"x"+imageHeight+"x"+getSize()+" stack will require "+size1+",\n or "+size2+" if opened as a virtual stack.");
        if (gd.wasCanceled()) return false;
        virtual = gd.getNextBoolean();
        return true;
    ImageStack convertToRealStack(ImagePlus imp) {
        ImageStack stack2 = new ImageStack(imageWidth, imageHeight, imp.getProcessor().getColorModel());
        int n = this.getSize();
        for (int i=1; i<=this.getSize(); i++) {
            IJ.showProgress(i, n);
            IJ.showStatus("Opening: "+i+"/"+n);
            ImageProcessor ip2 = this.getProcessor(i);
            if (ip2!=null)
                stack2.addSlice(this.getSliceLabel(i), ip2);
        return stack2;
    String[] open(String path) {
        if (path.startsWith("http://"))
            return openUrl(path);
        Vector v = new Vector();
        File file = new File(path);
        try {
            BufferedReader r = new BufferedReader(new FileReader(file));
            while (true) {
                String s=r.readLine();
                if (s==null || s.equals("") || s.startsWith(" "))
            String[] list = new String[v.size()];
            return list;
        catch (Exception e) {
            IJ.error("Open List Error \n\""+e.getMessage()+"\"\n");
        return null;

    String[] openUrl(String url) {
        String str = IJ.openUrlAsString(url);
        if (str.startsWith("<Error: ")) {
            IJ.error("Stack From List", str);
            return null;
        } else
            return Tools.split(str, "\n");
    /** Deletes the specified image, where {@literal 1<=n<=nslices}. */
    public void deleteSlice(int n) {
        if (n<1 || n>nImages)
            throw new IllegalArgumentException("Argument out of range: "+n);
        if (nImages<1) return;
        for (int i=n; i<nImages; i++)
            list[i-1] = list[i];
        list[nImages-1] = null;
    /** Returns an ImageProcessor for the specified slice,
        where {@literal 1<=n<=nslices}. Returns null if the stack is empty.
    public ImageProcessor getProcessor(int n) {
        if (n<1 || n>nImages)
            throw new IllegalArgumentException("Argument out of range: "+n);
        String url = list[n-1];
        ImagePlus imp = null;
        if (url.length()>0)
            imp = IJ.openImage(url);
        if (imp!=null) {
            labels[n-1] = (new File(list[n-1])).getName()+"\n"+(String)imp.getProperty("Info");
            ImageProcessor ip =  imp.getProcessor();
            int bitDepth = getBitDepth();
            if (imp.getBitDepth()!=bitDepth) {
                switch (bitDepth) {
                    case 8: ip=ip.convertToByte(true); break;
                    case 16: ip=ip.convertToShort(true); break;
                    case 24:  ip=ip.convertToRGB(); break;
                    case 32: ip=ip.convertToFloat(); break;
            if (ip.getWidth()!=imageWidth || ip.getHeight()!=imageHeight)
            ip = ip.resize(imageWidth, imageHeight);
            if (imp2!=null)
            return ip;
        } else {
                ImageProcessor ip = null;
                switch (getBitDepth()) {
                    case 8: ip=new ByteProcessor(imageWidth,imageHeight); break;
                    case 16: ip=new ShortProcessor(imageWidth,imageHeight); break;
                    case 24:  ip=new ColorProcessor(imageWidth,imageHeight); break;
                    case 32: ip=new FloatProcessor(imageWidth,imageHeight); break;
            return ip;
     /** Returns the number of images in this stack. */
    public int getSize() {
        return nImages;

    /** Returns the name of the specified image. */
    public String getSliceLabel(int n) {
        if (n<1 || n>nImages)
            throw new IllegalArgumentException("Argument out of range: "+n);
        if (labels[n-1]!=null)
            return labels[n-1];
            return (new File(list[n-1])).getName();
    public int getWidth() {
        return imageWidth;

    public int getHeight() {
        return imageHeight;
    public void reduce(int factor) {
        if (factor<2 || nImages/factor<1)
        nImages = nImages/factor;
        for (int i=0; i<nImages; i++) {
            list[i] = list[i*factor];
            labels[i] = labels[i*factor];
        ImagePlus imp = WindowManager.getCurrentImage();
        if (imp!=null) {