3D objects counter
fabrice.cordelieres at curie.u-psud.fr
Gabriel Landini for major feedbacks and suggestions
Threshold can now be set up using a slider. Modifications in algorithm: first
step of ID attribution followed by a second step of ID minimization
to the plugins folder and restart ImageJ.
This plug-in counts the number of 3D objects in a stack and displays the volume, the
surface, the centre of mass and the centre of intensity for each object. The
threshold value can be adjusted using the first slider and user may navigate
through the stack using a second slider. Results are presented both as a
results table and as new stacks where either the
full volume, the edges of each particle, the centre of mass or centre of
intensity is represented. On this stack, each structure appears under a
different colour. A tick box allows logging a summary of the overall
measurement (useful to keep a track of successive counts).