Modifier and Type | Field and Description |
---|---|
static int |
CTZ |
static int |
CZT |
static int |
TCZ |
static int |
TZC |
static int |
ZCT |
static int |
ZTC |
Constructor and Description |
---|
HyperStackConverter() |
Modifier and Type | Method and Description |
---|---|
void |
run(java.lang.String arg)
This method is called when the plugin is loaded.
|
void |
shuffle(ImagePlus imp,
int order)
Changes the dimension order of a 4D or 5D stack from
the specified order (CTZ, ZCT, ZTC, TCZ or TZC) to
the XYCZT order used by ImageJ.
|
static ImagePlus |
toHyperStack(ImagePlus imp,
int c,
int z,
int t)
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and
't' frames using the default ordering ("xyczt") and display mode ("Composite").
|
static ImagePlus |
toHyperStack(ImagePlus imp,
int c,
int z,
int t,
java.lang.String mode)
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and
't' frames using the default ordering ("xyczt") and the specified display
mode ("composite", "color" or "grayscale").
|
static ImagePlus |
toHyperStack(ImagePlus imp,
int c,
int z,
int t,
java.lang.String order,
java.lang.String mode)
Converts the specified stack into a hyperstack with 'c' channels,
'z' slices and 't' frames.
|
static void |
toStack(ImagePlus imp)
Converts the specified hyperstack into a stack.
|
public static final int CZT
public static final int CTZ
public static final int ZCT
public static final int ZTC
public static final int TCZ
public static final int TZC
public void run(java.lang.String arg)
PlugIn
public static ImagePlus toHyperStack(ImagePlus imp, int c, int z, int t)
public static ImagePlus toHyperStack(ImagePlus imp, int c, int z, int t, java.lang.String mode)
public static ImagePlus toHyperStack(ImagePlus imp, int c, int z, int t, java.lang.String order, java.lang.String mode)
imp
- the stack to be convertedc
- channelsz
- slicest
- framesorder
- hyperstack order ("default", "xyctz", "xyzct", "xyztc", "xytcz" or "xytzc")mode
- display mode ("composite", "color" or "grayscale")public static void toStack(ImagePlus imp)
public void shuffle(ImagePlus imp, int order)