Uses of Class
ij.ImageStack

Packages that use ImageStack

Package	Description
ij
ij.gui
ij.plugin
ij.plugin.filter
ij.process
ij.util

Uses of ImageStack in ij

Subclasses of ImageStack in ij

Modifier and Type	Class	Description
class	VirtualStack	This class represents an array of disk-resident images.

Methods in ij that return ImageStack

Modifier and Type	Method	Description
ImageStack	ImageStack.convertToFloat()	Creates a float version of this stack.
static ImageStack	ImageStack.create(int width, int height, int depth, int bitdepth)	Creates a new ImageStack.
static ImageStack	ImageStack.create(ImagePlus[] images)	Creates an ImageStack from an ImagePlus array.
ImageStack	ImagePlus.createEmptyStack()	Returns an empty image stack that has the same width, height and color table as this image.
ImageStack	ImageStack.crop(int x, int y, int z, int width, int height, int depth)	Creates a new stack by cropping this one.
ImageStack	ImageStack.duplicate()	Duplicates this stack.
ImageStack	ImagePlus.getImageStack()	Returns the base image stack.
ImageStack	ImagePlus.getStack()	Returns the image stack.
ImageStack	VirtualStack.sortDicom(java.lang.String[] strings, java.lang.String[] info, int maxDigits)

Methods in ij with parameters of type ImageStack

Modifier and Type	Method	Description
void	ImagePlus.setStack(ImageStack stack)	Replaces the image with the specified stack and updates the display.
void	ImagePlus.setStack(ImageStack newStack, int channels, int slices, int frames)
void	ImagePlus.setStack(java.lang.String title, ImageStack newStack)	Replaces the image with the specified stack and updates the display.

Constructors in ij with parameters of type ImageStack

Constructor	Description
ImagePlus(java.lang.String title, ImageStack stack)	Constructs an ImagePlus from a stack.

Uses of ImageStack in ij.gui

Subclasses of ImageStack in ij.gui

Modifier and Type	Class	Description
class	PlotVirtualStack	This is a virtual stack of frozen plots.

Uses of ImageStack in ij.plugin

Subclasses of ImageStack in ij.plugin

Modifier and Type	Class	Description
class	AVI_Reader	ImageJ Plugin for reading an AVI file into an image stack (one slice per video frame) Restrictions and Notes: - Only few formats supported: - uncompressed 8 bit with palette (=LUT) - uncompressed 8 & 16 bit grayscale - uncompressed 24 & 32 bit RGB (alpha channel ignored) - uncompressed 32 bit AYUV (alpha channel ignored) - various YUV 4:2:2 and 4:2:0 compressed formats (i.e., formats with full luminance resolution, but reduced chroma resolution - png or jpeg-encoded individual frames.
class	FileInfoVirtualStack	This plugin opens a multi-page TIFF file, or a set of raw images, as a virtual stack.
class	ListVirtualStack	This plugin opens images specified by list of file paths as a virtual stack.

Methods in ij.plugin that return ImageStack

Modifier and Type	Method	Description
ImageStack	StackCombiner.combineHorizontally(ImageStack stack1, ImageStack stack2)
ImageStack	StackCombiner.combineVertically(ImageStack stack1, ImageStack stack2)
ImageStack	CanvasResizer.expandStack(ImageStack stackOld, int wNew, int hNew, int xOff, int yOff)
static ImageStack	Filters3D.filter(ImageStack stackorig, int filter, float vx, float vy, float vz)
static ImageStack	ChannelSplitter.getChannel(ImagePlus imp, int c)	Returns, as an ImageStack, the specified channel, where 'c' must be greater than zero and less than or equal to the number of channels in the image.
ImageStack	AVI_Reader.makeStack(java.lang.String path, int firstFrame, int lastFrame, boolean isVirtual, boolean convertToGray, boolean flipVertical)	Create an ImageStack from an avi file with given path.
ImageStack	StackMaker.makeStack(ImageProcessor ip, int rows, int columns, int border)
ImageStack	RGBStackMerge.mergeStacks(int w, int h, int d, ImageStack red, ImageStack green, ImageStack blue, boolean keep)
static ImageStack	RGBStackMerge.mergeStacks(ImageStack red, ImageStack green, ImageStack blue, boolean keepSource)
ImageStack	PGM_Reader.openFile(java.lang.String path)
static ImageStack[]	ChannelSplitter.splitRGB(ImageStack rgb, boolean keepSource)	Splits the specified RGB stack into three 8-bit grayscale stacks.
ImageStack	Straightener.straightenStack(ImagePlus imp, Roi roi, int width)

Methods in ij.plugin with parameters of type ImageStack

Modifier and Type	Method	Description
ImageStack	StackCombiner.combineHorizontally(ImageStack stack1, ImageStack stack2)
ImageStack	StackCombiner.combineVertically(ImageStack stack1, ImageStack stack2)
ImagePlus	RGBStackMerge.createComposite(int w, int h, int d, ImageStack[] stacks, boolean keep)	Deprecated; replaced by mergeChannels().
ImageStack	CanvasResizer.expandStack(ImageStack stackOld, int wNew, int hNew, int xOff, int yOff)
static ImageStack	Filters3D.filter(ImageStack stackorig, int filter, float vx, float vy, float vz)
ImageStack	RGBStackMerge.mergeStacks(int w, int h, int d, ImageStack red, ImageStack green, ImageStack blue, boolean keep)
static ImageStack	RGBStackMerge.mergeStacks(ImageStack red, ImageStack green, ImageStack blue, boolean keepSource)
boolean	StackReducer.showDialog(ImageStack stack)
static ImageStack[]	ChannelSplitter.splitRGB(ImageStack rgb, boolean keepSource)	Splits the specified RGB stack into three 8-bit grayscale stacks.

Uses of ImageStack in ij.plugin.filter

Fields in ij.plugin.filter declared as ImageStack

Modifier and Type	Field	Description
ImageStack	RGBStackSplitter.blue
ImageStack	RGBStackSplitter.green
ImageStack	RGBStackSplitter.red

Methods in ij.plugin.filter with parameters of type ImageStack

Modifier and Type	Method	Description
void	RGBStackSplitter.split(ImageStack rgb, boolean keepSource)	Deprecated; replaced by ChannelSplitter.splitRGB().

Uses of ImageStack in ij.process

Methods in ij.process that return ImageStack

Modifier and Type	Method	Description
ImageStack	StackProcessor.crop(int x, int y, int width, int height)	Crops the stack to the specified rectangle.
ImageStack	FHT.getComplexTransform()	Converts this FHT to a complex Fourier transform and returns it as a two slice stack.
ImageStack	ColorProcessor.getHSB32Stack()	Returns an ImageStack with three 32-bit slices, representing hue, saturation and brightness
ImageStack	ColorProcessor.getHSBStack()	Returns an ImageStack with three 8-bit slices, representing hue, saturation and brightness
ImageStack	StackProcessor.resize(int newWidth, int newHeight)	Creates a new stack with dimensions 'newWidth' x 'newHeight'.
ImageStack	StackProcessor.resize(int newWidth, int newHeight, boolean averageWhenDownsizing)
ImageStack	StackProcessor.rotateLeft()
ImageStack	StackProcessor.rotateRight()

Methods in ij.process with parameters of type ImageStack

Modifier and Type	Method	Description
void	StackProcessor.copyBits(ImageStack src, int xloc, int yloc, int mode)
void	StackProcessor.filter3D(ImageStack out, float radx, float rady, float radz, int zmin, int zmax, int filter)	3D filter using threads
void	BinaryInterpolator.run(ImageStack stack)

Constructors in ij.process with parameters of type ImageStack

Constructor	Description
StackProcessor(ImageStack stack)	Constructs a StackProcessor from a stack.
StackProcessor(ImageStack stack, ImageProcessor ip)	Constructs a StackProcessor from a stack.

Uses of ImageStack in ij.util

Methods in ij.util that return ImageStack

Modifier and Type	Method	Description
static ImageStack	DicomTools.sort(ImageStack stack)	Sorts a DICOM stack by image number.

Methods in ij.util with parameters of type ImageStack

Modifier and Type	Method	Description
static double	DicomTools.getVoxelDepth(ImageStack stack)	Calculates the voxel depth of the specified DICOM stack based on the distance between the first and last slices.
static ImageStack	DicomTools.sort(ImageStack stack)	Sorts a DICOM stack by image number.