A B C D E F G H I L M N O P R S U V W X Y

A

actualx - Variable in class FracLac_2003AugustC

Coordinates marking where a grid started.

actualy - Variable in class FracLac_2003AugustC

Coordinates marking where a grid started.

addborder(ImageProcessor) - Method in class FracLac_2003AugustC

Adds a border to the image.

alpha - Variable in class FracLac_2003AugustC

Specifies the transparency of the graphic for subareas in drawit method.

AREA - Variable in class FracLac_2003AugustC

Area of convex hull.

AveragePix - Variable in class FracLac_2003AugustC

Holds average number of pixels per box size.

B

border - Variable in class FracLac_2003AugustC

Size of border to add around images.

C

centrex - Variable in class FracLac_2003AugustC

Centre coordinate of pixelated area.

centrey - Variable in class FracLac_2003AugustC

Centre coordinate of pixelated area.

circularity - Variable in class FracLac_2003AugustC

Circularity of convex hull.

colourarray - Variable in class FracLac_2003AugustC

Holds values for each colour for each square for doing sub areas.

count(boolean, int, int, ImageProcessor, int, int) - Method in class FracLac_2003AugustC

Sets up and calls method.

countstring - Variable in class FracLac_2003AugustC

Holds values for box count data.

D

doBoxCounts(boolean, ImageProcessor, int, int) - Method in class FracLac_2003AugustC

Counts pixels at each box size by calling method for each size.

docircul - Variable in class FracLac_2003AugustC

If set to 1, runs circularity calculations.

doglobal - Variable in class FracLac_2003AugustC

True does entire image area.

dosomethreshes - Variable in class FracLac_2003AugustC

True runs automatic thresholding.

dosubs - Variable in class FracLac_2003AugustC

True finds fractal dimension over several subareas of the image.

drawit(int, int, int, Graphics2D, int, int[], int[], double[]) - Method in class FracLac_2003AugustC

Draws differently coloured squares as specified over an image.

drawNewImage(ImagePlus, int, int, int[], int[], double[]) - Method in class FracLac_2003AugustC

Makes a new BufferedImage using width and height of passed image, and draws that passed image and colours on it by calling drawit method.

E

expandImage(ImageProcessor, double, double, double, double) - Method in class FracLac_2003AugustC

Adds a border around an image using ImageProcessor functions.

F

fill - Variable in class FracLac_2003AugustC

True fills coloured squares if subareas are being done.

FindMargins(ImageProcessor) - Method in class FracLac_2003AugustC

Finds margins of pixelated part of binary image and sets meassurements for height, width, and span.

findMinCover(int[][], int, int) - Method in class FracLac_2003AugustC

Returns an array holding the minimum value for each position in an array of arrays.

finishdata(int, String, ImageProcessor, FracLac_2003AugustC.StoreAvgs, boolean, boolean, String) - Method in class FracLac_2003AugustC

Calls functions to findMinCover and findAvgCover fractal dimensions.

fnum(double, int) - Method in class FracLac_2003AugustC

Formats numbers.

foreground - Variable in class FracLac_2003AugustC

Value of pixels that will be assessed.

FracLac_2003AugustC - class FracLac_2003AugustC.

Plugin for ImageJ returns an ImageJ results window showing fractal dimensions, lacunarity, and other measures for binary images.

FracLac_2003AugustC.ColourRule - class FracLac_2003AugustC.ColourRule.

Class specifies colours to use for colour coding local fractal dimensions calculated over many subareas.

FracLac_2003AugustC.ColourRule() - Constructor for class FracLac_2003AugustC.ColourRule

Constructor accepts no parameters.

FracLac_2003AugustC() - Constructor for class FracLac_2003AugustC

G

getCircularityOfConvexHull(ImageProcessor) - Method in class FracLac_2003AugustC

Gets circularity of convex hull for passed ImageProcessor.

GetDimensions(ImageProcessor) - Method in class FracLac_2003AugustC

Determines the dimensions of the image, and sets some of the important variables.

getInputs() - Method in class FracLac_2003AugustC

Gets user inputs from popups to set global variables.

getPolygon(ImageProcessor) - Method in class FracLac_2003AugustC

This long-winded method determines the vertices of a polygon which forms a convex hull around the image.

H

HadPixAllLocAllSize - Variable in class FracLac_2003AugustC

Integer array of arrays for keeping track of the boxes that had pixels over all locations.

I

img - Variable in class FracLac_2003AugustC

Is reused for each image processed.

incs - Variable in class FracLac_2003AugustC

Maximum number of box sizes to use in a series.

ip - Variable in class FracLac_2003AugustC

Is reused for each image processed.

L

limit - Variable in class FracLac_2003AugustC

Integer for limit on number of boxes.

M

makeColourRule(int) - Method in class FracLac_2003AugustC.ColourRule

Sets values for colours in local dimensions graphic depending on passed value.

makeheadings() - Method in class FracLac_2003AugustC

Lists the headings for the results file.

makerandset(int, int) - Method in class FracLac_2003AugustC

Makes a set of random x and y values within bounds x and y.

maxAcross - Variable in class FracLac_2003AugustC

Stores maximum of pixelated area's width or height

maxpercent - Variable in class FracLac_2003AugustC

Maximum percent of image area to use as box size.

moveGridalloverCountPixels(int, int, int, int, int, int, ImageProcessor) - Method in class FracLac_2003AugustC

Reinitializes FracLac_2003AugustC.PixPerBox array then goes over part of the ip using a series of smaller boxes recording number of pixels in each box and number of boxes that had pixels.

mprob - Variable in class FracLac_2003AugustC

Holds probability density data.

N

newNumSizes - Variable in class FracLac_2003AugustC

Working variable for number of box sizes that is used.

numlocations - Variable in class FracLac_2003AugustC

Number of times to do an entire series of grids (i.e., if multiple origins are being used).

O

openAndrun(boolean) - Method in class FracLac_2003AugustC

Opens and processes selected files.

P

perimeter - Variable in class FracLac_2003AugustC

Perimeter of convex hull.

PixPerBox - Variable in class FracLac_2003AugustC

Holds count of number of pixels per box size.

printsummary - Variable in class FracLac_2003AugustC

"Y" prints summary data.

probmass(int) - Method in class FracLac_2003AugustC

Returns a double array holding a probability density distribution for the passed array, using as many elements as the passed number; since it is usually called after each box size is scanned, it is usually for a particular epsilon (box size) at a particular location.

R

randomsquares - Variable in class FracLac_2003AugustC

True checks a random sample of subareas over the image.

ready(ImageProcessor) - Method in class FracLac_2003AugustC

Thresholds, finds margins, and sets foreground value on image to be analyzed.

rec - Variable in class FracLac_2003AugustC

Current rectangle enclosing image.

roundness - Variable in class FracLac_2003AugustC

Variable for roundness of convex hull.

run(String) - Method in class FracLac_2003AugustC

Runs FracLac.

runFL(int, boolean, boolean, ImageProcessor, int, int) - Method in class FracLac_2003AugustC

C

runSubs(boolean) - Method in class FracLac_2003AugustC

Finds local fractal dimensions over portions of an image.

S

savecolour(double, int) - Method in class FracLac_2003AugustC

Saves the colour in FracLac_2003AugustC.colourarray to use at each square for which a local dimension was calculated.

sdir - Variable in class FracLac_2003AugustC

Directory where files to be opened are.

showcolours - Variable in class FracLac_2003AugustC

True shows a graphic colour coded for the fractal dimension of each subarea.

sizestring - Variable in class FracLac_2003AugustC

Holds values for box count data.

stdboxsizes(double) - Method in class FracLac_2003AugustC

Calculates the array of box sizes.

StdDev - Variable in class FracLac_2003AugustC

Holds standard deviations of number of pixels per box size.

subboxsize - Variable in class FracLac_2003AugustC

Size of boxes to use if doing subareas.

subsamples - Variable in class FracLac_2003AugustC

Number of subareas to analyze if doing a random sample.

U

userNumber - Variable in class FracLac_2003AugustC

True if the user wants to set the number of boxes rather than use a value optimized for each image size.

V

vDiameter - Variable in class FracLac_2003AugustC

Vertical axis of oval enclosing pixelated area.

viewplots - Variable in class FracLac_2003AugustC

True shows graphs of regression lines.

W

win - Variable in class FracLac_2003AugustC

Is reused for each image.

writeFinal(FracStats, FracStats, ImageProcessor, FracLac_2003AugustC.StoreAvgs, boolean, boolean, String, int, String) - Method in class FracLac_2003AugustC

Writes the final values to the IJ window.

X

xarray - Variable in class FracLac_2003AugustC

Coordinates of each origin for coloured squared for doing sub areas.

Y

yarray - Variable in class FracLac_2003AugustC

Coordinates of each origin for coloured squared for doing sub areas.

A B C D E F G H I L M N O P R S U V W X Y